miR-125b-5p targeting TRAF6 relieves skeletal muscle atrophy induced by fasting or denervation
Introduction
Skeletal muscle atrophy occurs in various conditions, including unloading, limb immobilization, fasting, denervation, and cachexia (1-3). An imbalance between anabolic and catabolic processes, i.e., protein degradation exceeding protein synthesis (4,5), results in a series of pathological changes, such as reduced cross-sectional area (CSA) of muscle fibers, myofibrillar sarcomeres disruption, myofibril degradation, disturbance of myotube formation, and fibrillation (6-8). Peripheral neuro-disconnection of skeletal muscle is the cause of denervated muscle atrophy (9), where an increased rate of proteolysis is believed to be mediated through the ubiquitin-proteasome system (UPS) and autophagy-lysosome system (ALS) (10-12).
The UPS, a complex pathway activated upon denervated-dependent skeletal muscle atrophy, contributes to the loss of muscle mass. In different models of skeletal muscle atrophy, the muscle-specific E3 ubiquitin ligases, such as MAFbx/atrogin-1 and MuRF1, are up-regulated (13-15), and overexpression of either MAFbx or MuRF1 in skeletal muscle fibers may enhance proteolytic function, leading to muscle atrophy (3,16). It has been reported that mice knocked out of MAFbx or MuRF1 are resistant to various types of muscle atrophy, suggesting that these two ligases are essential to atrophy-related protein degradation (17-19).
The ALS was once thought to be activated in muscle cells during catabolic conditions (20), and autophagy has aroused significant concern for its role in metabolic homeostasis and disease progression of skeletal muscle. Beclin1 is an essential autophagy protein, and its increased expression in autophagy impairs the function of skeletal muscle (21). Mitochondrial regulation is critically important to mediate mitophagy and to maintain muscle function, whereas inactivation of the genes coding for Parkin, Pink1, or Bnip3 induces mitochondrial abnormalities (22,23). Accumulating evidence shows that the mitochondrial network is usually remodeled through the ALS during skeletal muscle atrophy (24-26).
As a member of the tumour necrosis factor (TNF) receptor-associated factor (TRAF) family, TNF receptor adaptor protein 6 (TRAF6) is involved in the activation of various signaling pathways, including NF-κB, MAPK, and phosphatidylinositide 3-kinase/Akt (PI3K/Akt) (27-29). Different from other members of the TRAF family, TRAF6 is a unique E3 ubiquitin ligase and adaptor protein. Following fasting, denervation, or cancer cachexia, TRAF6 expression is increased in atrophic skeletal muscle (9,30,31), where both the UPS and ALS pathways are coordinately up-regulated. Therefore, attenuation of skeletal muscle atrophy in TRAF6-knockout (TRAF6mko) mice may be considered to result from inhibition of both UPS and ALS (27).
MicroRNAs (miRNAs, miRs) are short, noncoding RNAs that down-regulate gene expression by binding to complementary sequences in the 3'-untranslated regions (3'-UTR) of target mRNAs. Recently, miRNAs have emerged as key regulators of many biological processes including skeletal muscle metabolic homoeostasis. Abundant evidence suggests that dynamic changes of miRNAs are involved in the regulation of skeletal muscle atrophy (32-35). For example, the decreased expression of miR-23a induces the translation of TRIM63/MuRF1 and Fbxo32/atrogin-1, whereas overexpression of miR-23a prevents diabetes-induced muscle cachexia and attenuates renal fibrosis lesions via muscle-kidney crosstalk (36); miR-29b promotes atrophy of myotubes, whereas its inhibition attenuates multiple stimuli-induced muscle atrophy (37). In addition, miR-378 acts as a vital coordinator of autophagy and apoptosis in maintaining normal muscle homeostasis (38). Our previous work (9) has also shown that miR-351 targeting TRAF6 alleviated dexamethasone-induced myotube atrophy and denervation-induced muscle atrophy.
It has been reported that miR-125b participates in neuronal differentiation of mouse P19 cells by targeting RNA binding protein LIN-28, and promotes neuronal differentiation of human cells by inhibiting multiple target genes (39,40). Moreover, the effect of miR-125b on insulin-like growth factor II (IGF-II) negatively regulates myoblast differentiation in vitro and muscle regeneration in vivo (41). However, the regulation of miR-125b on skeletal muscle atrophy has not been fully studied. To determine the specific regulation of miR-125b-5p in this aspect, in the current study, we determined that miR-125b-5p was down-regulated in fasting-induced atrophic C2C12 myotubes or denervated tibialis anterior (TA) muscles, and we also investigated the interaction between miR-125b-5p and TRAF6, showing that miR-125b-5p directly targeted the 3'-UTR of Traf6. Furthermore, we found that overexpression of miR-125b-5p alleviated fasting-induced atrophy of C2C12 myotubes and inhibited denervated-induced muscle atrophy in TA muscles, and concomitantly the expression of the UPS and ALS related-proteins was down-regulated. Inversely, inhibition of miR-125b-5p accelerated the progress of muscle atrophy via up-regulating the expression of UPS and ALS related-proteins. Collectively, our data revealed that miR-125b-5p might relieve skeletal muscle atrophy by targeting TRAF6 in vitro and in vivo.
Methods
C2C12 cell culture and transfection
Mouse C2C12 myoblasts (Cell Bank, Chinese Academy of Sciences, Shanghai, China) were cultured in growth medium consisting of Dulbecco’s modified Eagle’s medium (DMEM, Gibco-BRL, Gaithersburg, MD, USA) supplemented with 10% fetal bovine serum (FBS) (Gibco-BRL), 100 U/mL penicillin (Sigma-Aldrich, St. Louis, MO, USA), and 100 µg/mL streptomycin (Sigma-Aldrich). Myoblasts were grown to approximately 90% confluence in a 6-well plate and then transferred into another medium containing DMEM supplemented with 2% horse serum and 1% penicillin and streptomycin for 7-day differentiation into myotubes. Then, the formed C2C12 myotubes were treated with Hank’s Balanced Salt Solution (HBSS, Gibco BRL, Gaithersburg, MD, USA) for 12 and 24 h respectively, whereas C2C12 myotubes stored in the differentiation medium were used as a control.
Transfection of C2C12 myoblasts with miR-125b-5p mimics, miR-125b-5p inhibitor, or vehicle (as negative control) was performed at the fourth day of differentiation with transfection reagents (RiboBio, Guangzhou, China) according to the manufacturer’s instructions. After 3 days, the sample was switched to HBSS for 24 h as above described.
Animal surgery and transfection
Sprague-Dawley (SD) rats (weight ~200 g) were supplied by the experimental animal center of Nantong University (Nantong, Jiangsu, China). To induce denervated skeletal muscle atrophy, the left sciatic nerve of rats was cut at the mid-thigh region for 1.5 cm. The sham-operated rats underwent the same procedures but without sciatic nerve cut. Rats were killed at 0, 3, 7, 14 and 28 days after surgery respectively.
For transfection, the operated rats were randomly divided into four groups (vehicle as negative control, miR-125b-5p agomir, miR-125b-5p antagomir, miR-125b-5p agomir plus TRAF6 overexpression) to receive different injections into their TA muscles from the surgery day. In brief, miR-125b-5p agomir was injected every 3 days; antagomir was injected for 3 successive days from the surgery day. The TA muscles were taken on the 14th day post-surgery.
Immunostaining
To determine the diameter of C2C12 myotubes, the sample was fixed by 4% PFA for 30 min at room temperature, washed with phosphate buffer solution (PBS) for 15 min, and then blocked with an immunostaining blocking buffer (Beyotime, Haimen, China) for 1 h at room temperature, followed by incubation with primary antibody anti-major histocompatibility complex (MHC) (MRC OX-6, 1:200, Abcam, Cambridge, MA, USA) overnight at 4 °C. Secondary antibody goat anti-mouse IgG-FITC (1:500, Abcam) was further added to allow incubation for 2 h at room temperature. The images were captured by fluorescence microscope (Zeiss) and the diameter of C2C12 myotubes was measured by Image J software (http://rsb.info.nih.gov./ij/).
Skeletal muscle tissues were incubated with anti-laminin (ab11575, 1:200, Abcam) overnight at 4 °C, followed by incubation with secondary antibody and visualization as above mentioned. The CSA of rat TA muscle was measured by Image J software.
Luciferase reporter assay
HEK293T cells were cultured in 24-well plates in DMEM supplemented with 10% FBS and 1% penicillin and streptomycin. The cells were transfected with lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) plus TRAF6 3'-UTR wide type plasmid, TRAF6 3'-UTR mutant plasmid with miR-125b-5p, or with vehicle (negative control). After 24 h, transfected cells were collected, and luciferase activity was measured using the Dual Luciferase Assay System (Promega, Madison, WI, USA). The data were normalized to the firefly luciferase signal.
Western blot analysis
C2C12 myotubes or frozen rat TA muscles were homogenized in RIPA lysis buffer (P0013B) containing 1 mM PMSF (ST506), and protease inhibitor (P1010, all the above reagents from Beyotime). Total protein (40 µg) was separated on 10% SDS-PAGE gels (Beyotime) and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA) by electroblotting. The blots were blocked with 5% nonfat milk in TBS for 1 h at room temperature, and then incubated overnight at 4 °C with the respective primary antibodies. The primary antibodies included anti-myosin heavy chain (MHC, 1:2,000, R&D Systems, Minneapolis, MN, USA), anti-TRAF6 (1:1,000; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), anti-MuRF1 (1:1,000, Cell signaling technology, Beverly, MA), anti-MAFbx (1:1,000, Abcam), anti-ATG7 (1:1,000, Abcam), anti-BNIP3 (1:1,000, Cell signaling technology), anti-beclin-1 (1:1,000, Cell signaling technology), anti-PINK1 (1:1,000, Abcam), anti-LC3B (1:1,000, MBL, Boston, MA, USA), and anti-Tubulin (1:2,000, Proteintech, Wuhan, China). After washes with Tris-buffered saline containing 0.2–0.4% Tween-20 (TBST), the membranes were incubated with appropriate secondary antibodies (Sigma) at room temperature for 1 h. Images were obtained using a TANON imaging system (Shanghai, China).
RNA isolation and RT-qPCR
RNA was extracted from samples using TRIZOL reagent (sigma) and RNeasy mini kit (QIAGEN, Hilden, Germany) according to the manufacturer’s instructions. The RNA sample (1 µg) was used to synthesize first strand cDNA with a reverse transcription system using an oligo (dT) primer (Applied Biosystems, Carlsbad, CA, USA) and Omniscript reverse transcription kit (QIAGEN). Bulge-loopTM miRNA qRT-PCR Primer Sets (one RT primer and a pair of qPCR primers for each set) specific for miR-125b-5p was designed by RiboBio (Guangzhou, China). Quantitative analysis of gene expression by real-time qPCR was carried out using the CFX96 (Bio-Rad) system. Each real-time PCR (10 µL) contained 1 µL of cDNA, 5 µL of SYBR Green qPCR Master mix (QIAGEN) with forward and reverse primers at a final concentration of 10 µM. The following primers were used: Rat-Hprt1-F: TGCTGAAGATTTGGAAAAGGTGT, Rat-Hprt1-R: GCGCTTTAATGTAATCCAGCAG; Rat-Traf6-F: TGTGTGCAAAAGATGGAGCT, Rat-Traf6-R: GGCACAGCACAGTTTACACA.
All reactions were performed using the following thermal cycler conditions: 95 °C for 10 min, followed by 40 cycles of denaturation at 95 °C for 2 s, annealing at 60 °C for 20 s and extension at 70 °C for 10 s. The reaction was followed by a melting curve from 70 to 95 °C in 5 s increments of 0.5 °C to ensure amplification specificity. The data of TRAF6 expression normalization was accomplished using the endogenous control (Hprt1). The miR-125b-5p transcript levels were normalized to the U6 transcript levels. The relative fold-change in expression was calculated using the ΔΔCt method.
Statistical analysis
All data are expressed as means ± SD. Student’s one-way ANOVA was used to compare differences between groups. All statistical analyses were conducted with a SPSS Software Version 17.0 (SPSS Inc., Chicago, IL, USA). P<0.05 was considered as statistically significant.
Results
Decreased expression of miR-125b-5p during muscle atrophy
To determine the expression of miR-125b-5p during skeletal muscle atrophy, we chose fasting-induced atrophic C2C12 myotubes and denervated TA muscle as in vitro and in vivo models of skeletal muscle atrophy respectively.
The diameter of atrophic C2C12 myotubes was significantly reduced as compared to that of normal C2C12 myotubes. The expression of miR-125b-5p in atrophic C2C12 myotubes was significantly decreased as compared to that in normal C2C12 myotubes (Figure 1A,B,C).
The rats were subjected to sciatic nerve-cut surgery and were then killed at 3, 7, 14 and 28 days post-surgery respectively, followed by harvesting of 4 samples of atrophic TA muscles (based on different animal-killing times) respectively. The non-atrophic TA muscle of sham-operated rats (which were killed at 0 day post sham-surgery) served as control. Either the wet weight ratio or the CSA of TA muscle fibers was significantly decreased in 4 samples of atrophic TA muscles as compared to in control, non-atrophic TA muscle (Figure 1D,E,F). Likewise, the expression of miR-125b-5p in TA muscle was also significantly decreased in 4 samples of atrophic TA muscles as compared to in control, non-atrophic TA muscle (Figure 1G).
Interaction of miR-125b-5p with 3'-UTR of TRAF6
To explore the mechanism underlying the regulation of muscle atrophy by miR-125b-5p, TargetScan analysis suggested that TRAF6 might be a putative target of miR125b-5p (Figure 2A). Interestingly, all nucleotides in the seed recognition site of the Traf6 3'-UTR were conserved across several species. In other words, TRAF6 mRNA contained a highly-conserved seed recognition site which was capable of binding to the seed sequence of miR-125b-5p (Figure 2B).
The luciferase reporters were allowed to contain the wild type 3'-UTR of TRAF6 or mutant 3'-UTR of TRAF6, thus yielding 2 luciferase constructs. The miR-125b-5p mimics or vehicle (negative control), together with 2 luciferase constructs, were respectively co-transfected into HEK-293T cells, followed by measurement of the luciferase activity. For wild type 3'-UTR of TRAF6, miR-125b-5p mimics led to a significant reduction in the relative luciferase activity, but for mutant 3'-UTR of TRAF6, no decrease in the relative luciferase activity was observed (Figure 2A,C). This result suggested that miR-125b-5p might directly target TRAF6 3'-UTR. On the other hand, Western Blot analysis indicated that the expression of TRAF6 was increased in atrophic C2C12 myotubes, displaying an opposite change pattern with that of miR-125b-5p (Figure 2D vs. Figure 1G), providing further evidence for TRAF6 being a target of miR-125b-5p.
Effects of miR-125b-5p on fasting-induced atrophy of C2C12 myotubes
After miR-125b-5p mimics was transfected into atrophic C2C12 myotubes, the expression of miR-125b-5p was largely increased, and the extraordinary level of overexpression was nearly >200-fold over normal expression level (negative control), while transfection of atrophic C2C12 myotubes with miR-125b-5p inhibitor dramatically repressed the expression of miR-125b-5p to a near-negligible level (Figure 3A). It was understandable that the increased or decreased expression of miR-125b-5p, due to transfection with miR-125b-5p mimics or miR-125b-5p inhibitor, significantly augmented or reduced the diameter of atrophic C2C12 myotubes, as compared to unchanged expression of miR-125b-5p (Figure 3B,C). The data suggested that myotube atrophy might be relieved by high expression of miR-125b-5p.
The protein level of TRAF6 or UPS-related proteins, MuRF1 and MAFbx, in atrophic C2C12 myotubes was significantly decreased by transfection with miR-125b-5p mimic. Transfection with miR-125b-5p inhibitor, however, significantly enhanced the protein level of TRAF6 or UPS-related proteins (Figure 3D). Moreover, enhanced and reduced expression of miR-125b-5p in atrophic C2C12 myotubes, due to transfection with miR-125b-5p mimics or miR-125b-5p inhibitor, significantly decreased or increased ALS-related protein, respectively (Figure 3E). Taken together, these results indicated that miR-125b-5p relieved C2C12 myotube atrophy possibly through regulation of UPS and ALS.
Effects of miR-125b-5p on denervated atrophy of TA muscle
Administration of miR-125b-5p agomir significantly increased the expression of miR-125b-5p in atrophic TA muscles, and administration of miR-125b-5p antagomir significantly decreased the expression of miR-125b-5p in atrophic TA muscles, as compared to vehicle transfection (negative control) (Figure 4A). After administration of miR-125b-5p agomir, the CSA of TA muscle fibers group was significantly increased as compared to negative control, and vice versa after administration of miR-125b-5p antagomir (Figure 4B).
Treatment with miR-125b-5p agomir led to an increase in MHC protein levels as well as a decrease in TRAF6 protein levels. Correspondingly, the expressions of MAFbx and MuRF-1 were down-regulated or up-regulated in TA muscles after transfection with the miR-125b-5p agomir or miR-125b-5p antagomir, respectively (Figure 4C).
It was further found (Figure 4D) that a well-organized myofibrillar structure and normal subsarcolemmal and intermyofibrillar distribution of mitochondria were visible in TA muscles due to injection of miR-125b-5p agomir. However, morphological observation of TA muscles after injection of miR-125b-5p antagomir provided the worse result even than after vehicle transfection (negative control). In addition, overexpression of miR-125b-5p (after injection of miR-125b-5p agomir) significantly decreased the expression of ALS-related protein (Figure 4E).
Discussion
The discovery of miRNAs has provided new insights into mechanisms by which skeletal muscle development, regeneration, and dysfunction are controlled (42,43). As has been reported, miR-1 expression is up-regulated in a dexamethasone-induced muscle atrophy model, and miR-1 induces the expression of MuRF1 or MAFbx via heat shock protein 70 (HSP70)/protein kinase B (Akt)/FOXO3 signaling pathway, contributing to muscle atrophy (44); miR-125b is involved in neuronal differentiation of mouse P19 cells by targeting the RNA binding protein LIN-28, and also promotes neuronal differentiation in human cells by inhibiting multiple target genes (39). Moreover, miR-125b targets DNMT3b and mediates p53 DNA methylation involving in the vascular smooth muscle cell proliferation induced by homocysteine (45). In the present study, we attempted to investigate the regulating effect of miR-125b on skeletal muscle atrophy.
miR-125b-5p was down-regulated during C2C12 myotube atrophy induced by fasting or during TA muscle atrophy induced by denervation, suggesting that miR-125b-5p may play an important role during muscle atrophy. Luciferase activity assay revealed that miR-125b-5p might directly target TRAF6 3'-UTR. The expression of TRAF6 was increased in C2C12 myotubes after fasting-induced atrophy, displaying an opposite change pattern with that of miR-125b-5p, suggesting that miR-125b-5p might negatively target TRAF6.
After transfection of atrophic C2C12 myotubes or denervated TA muscles with miR-125b-5p mimics/agomir or miR-125b-5p inhibitor/antagomir respectively, we noted that overexpression of miR-125b-5p increased the diameter of atrophic C2C12 myotubes and also increased the CSA of TA muscles, implying that miR-125b-5p might be involved in protection of muscle atrophy. By the way, the joint use of TRAF6 overexpression lentivirus might, more or less, counteract the impact of using miR-125b-5p mimics/agomir alone, providing more evidence for negative regulation of miR-125b-5p by TRAF6.
Previous studies have revealed that TRAF6 is an important adaptor protein involved in receptor-mediated activation of various signaling pathways in response to aging, denervation, and chronic diseases (9,46,47). Muscle-specific depletion of TRAF6 preserves skeletal muscle mass, fiber size, and contractile functions in response to denervation and cancer cachexia (27). TRAF6 has been found to interact with multiple components of the UPS and/or ALS in some cell types, and regulates skeletal muscle mass and activation of the UPS and/or ALS in denervated skeletal muscle (27). TRAF6 interacts with LC3B and ubiquitinylates (Lys-63-linked) beclin-1, and further regulates some autophagy formation in response to Toll-like receptor 4 signaling (48). Hence, in the present study, we detected the expression of muscle-specific E3 ubiquitin ligases: MuRF1 and MAFbx as well as ALS related-proteins: Atg7, beclin-1, Bnip3, LC3B, and PINK1. The expressions of these proteins were all inhibited by miR-125b-5p agomir. Conversely, the expressions of these UPS- and ALS-related proteins were increased by miR-125b-5p antagomir. Collectively, the data indicate that miR-125b-5p might attenuate muscle atrophy by blocking UPS- and ALS-related proteins through targeting TRAF6.
Growing evidence shows that ROS and redox disturbances may represent important signaling events in skeletal muscle atrophy (49,50), and treatment with antioxidants significantly retarded the development of skeletal muscle atrophy induced by fasting or denervation (51,52). P53, a tumor suppressor protein, acts as a regulator of cellular homeostasis, regulating oxidative stress to maintain cellular health and function in skeletal muscle (53). Of note, miR-125b blocked Bax/cytochrome C/caspase-3 apoptotic signaling pathway in rat models of cerebral ischemia-reperfusion injury by targeting p53 (54). Due to the diversity of targets for miRNAs, there may be other target genes of miR-125b-5p besides TRAF6 in the context of skeletal muscle atrophy. Hence, it would be highly interesting to identify more potential targets of miR-125b-5p in the regulation of skeletal muscle atrophy.
In conclusion, miR-125b-5p alleviates muscle atrophy via targeting of TRAF6 directly or indirectly, and the application of miR-125b-5p may represent a therapeutic approach to treat muscle atrophy.
Acknowledgments
Funding: This work was supported by National Natural Science Foundation of China (grant No. 81671230 and 81871554), the 973 Program (grant No. 2014CB542202 and 2014CB542203), a project funded by Jiangsu Provincial Key Medical Center and the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD), and 2019 Jiangsu College Students Innovation and Entrepreneurship Training Program.
Footnote
Conflicts of Interest: The authors have no conflicts of interest to declare.
Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. The whole study protocol was approved by the Ethics Committee of Nantong University (No. 20160308-009) and all the procedures were done according to the Chinese Guidelines for the Care and Use of Laboratory Animals.
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