Hierarchical cluster analysis in the study of the effect of cytokine expression patterns on endometrial repair and receptivity after hysteroscopic adhesiolysis
Original Article

Hierarchical cluster analysis in the study of the effect of cytokine expression patterns on endometrial repair and receptivity after hysteroscopic adhesiolysis

Bohan Li, Hua Duan, Sha Wang, Yiyi Wang, Yanan Chang, Zhengchen Guo, Yazhu Li

Department of Minimally Invasive Gynecologic Center, Beijing Obstetrics and Gynecology Hospital, Capital Medical University, Beijing, China

Contributions: (I) Conception and design: B Li, H Duan; (II) Administrative support: B Li, H Duan; (III) Provision of study materials or patients: S Wang; (IV) Collection and assembly of data: B Li; (V) Data analysis and interpretation: B Li; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors.

Correspondence to: Hua Duan, PhD, MD. Department of Minimally Invasive Gynecologic Center, Beijing Obstetrics and Gynecology Hospital, Capital Medical University, No. 17 Qihelou street, Dongcheng District, Beijing 100006, China. Email: duanhua@ccmu.edu.cn.

Background: In a previous study, we reported that amnion promotes endometrial cell growth by regulating cytokines. In this study, hierarchical cluster analysis enabled the evaluation of cytokine expression changes after amnion treatment to be explored by cluster patterns. The role of IL1B on endometrial repair and receptivity was revealed.

Methods: A total of 30 patients were recruited in this clinical trial (NCT02496052) of hysteroscopic adhesiolysis. They were randomly allocated into an amnion grafts group (amnion group) and a control group. After hysteroscopic adhesiolysis, a Foley catheter covered with a sterilized freeze-dried amnion graft was inserted into the uterine cavity of the participants in the amnion group, whereas for the control group, a Foley catheter without amnion graft was inserted. After surgery, patient follow-up was done for a year. Uterine exudates were collected every day for seven days after surgery, and analyzed by enzyme-linked immunosorbent assays. Hierarchical cluster analysis was performed to compare expression patterns of each cytokine. Single-gene gene set enrichment analysis and differentially expressed genes enrichment analysis of IL1B were performed using NCBI GEO (N=151) to evaluate its potential mechanisms and impact on endometrial receptivity.

Results: Compared to the control group, cytokine expression patterns of the amnion group revealed significant stratifications, which were highly correlated with the expression levels of IL1B on the sixth to seventh day after surgery, improving the pregnant rate. Wilcoxon test revealed significantly low expression levels of IL1B in the reduced endometrial receptivity group compared to the normal group. Moreover, gene set enrichment analysis showed that lysosomes, cell cycle, and calcium signaling pathways were associated with the biological processes in which IL1B plays a role. Screening and enrichment analyses of differentially expressed genes further verified the mechanisms of action of IL1B on endometrial repair and receptivity recovery.

Conclusions: Amnion promotes endometrial repair and receptivity by altering the expression levels and patterns of IL1B. Furthermore, by affecting lysosomal, cell cycle, and calcium signaling pathways, IL1B may be one of the factors involved in endometrial repair and receptivity recovery.

Keywords: Intrauterine adhesion; cytokines; hierarchical cluster analysis model; endometrial repair; endometrial receptivity


Submitted Jan 14, 2021. Accepted for publication Mar 14, 2021.

doi: 10.21037/atm-21-195


Introduction

Intrauterine adhesions (IUAs), also known as the Asherman syndrome, are caused by damage to the basal layer of the endometrium and can partially or completely obliterate the uterine cavity (1). Clinical conditions associated with IUAs include menstrual disorders (oligomenorrhea or secondary amenorrhea), infertility, recurrent spontaneous abortion, and premature labor. Infertility is one of the main reasons as to why IUA patients seek clinical treatment (2). However, it is challenging to treat infertility. Currently, the most common therapeutic option for IUA is hysteroscopic adhesiolysis. Intrauterine devices (IUD) and Foley catheters are used to prevent adhesion reformation after surgery, and the rate of adhesion reformation ranges between 30%-66% even after the use of IUD and Foley catheters (3). Furthermore, postoperative pregnancy rate has been reported to be about 40% (4). Even though re-adhesion of the uterine cavity after hysteroscopic adhesiolysis is affected by many factors, inflammation is one of the main causes of scar formation. Previous studies on inflammatory responses focused on the expression of immune-related proteins or cytokines (5-7). However, postoperative inflammation is a dynamic process. The early stages of traumatic inflammation and repair include two phases, the first being inflammatory exudation and neovascularization (inflammatory phase), and the second being fibrosis as well as tissue proliferation and migration (repair phase) (8). Orhue et al. (9) reported that wound healing begins approximately seven days after hysteroscopic adhesiolysis, while Xin et al. (7) showed that the two aforementioned phases have a high correlation with inflammatory responses, which are dominated by macrophage transformations. Immune responses are significantly different in the inflammatory phase compared to the repair phase.

In our previous study, we reported that human amniotic mesenchymal stromal cells promote endometrial cell proliferation by regulating cytokines (10). Amnion gifts exhibit a large number of cytokines and receptors that can enhance injury repair. It accelerates tissue repair by inhibiting the expression levels of TNF-α and VEGF in the wounded area and prevents epithelial cell apoptosis by stimulating cell migration and adhesion. Moreover, in a previous clinical study, we showed that sterilized freeze-dried amnion grafts promote endometrial repair and receptivity after surgery (1). These findings show that amnion graft activity is exerted through cytokine regulation. Differences in expression patterns and cytokine types in different periods after surgery play an important role in endometrial receptivity recovery.

Hierarchical cluster analysis (HCA), also referred to as hierarchical or tree clustering, is a cluster analysis method that is commonly used in data search or mining to establish a hierarchical structure of clustering (11). This method uses a randomized clustering algorithm to group factors with similar characteristics into clusters. Based on the available features, clustering analysis classifies mixed factors into homogenous groups. Each cluster has its own signature for identification. This approach has been applied in many clinical fields (12,13). In this study, HCA, in combination with regression analysis effectively clustered the stages of inflammation and cytokines. The clusters enabled the evaluation of differences in cytokine expression levels and patterns between the amnion group and the control group.

Few studies have evaluated the effects of changing cytokine expression patterns in different inflammation stages on the endometrium, after surgery. Therefore, we evaluated the differences in cytokine expression patterns at various stages of post-operative inflammation. Even though current public databases lack the genome-wide expression data for intrauterine adhesions, data on infertility associated endometrial damage is widely available. We analyzed these data to determine the biological mechanisms of cytokines in the process of endometrial repair and receptivity recovery. We present the following article in accordance with the MDAR reporting checklist (available at http://dx.doi.org/10.21037/atm-21-195).


Methods

Study design

This was a randomized controlled clinical trial (Trial Registration Number NCT02496052). A total of 30 patients were recruited in this study and randomly allocated into the amnion and control groups with 15 cases each. Randomization was done using a computer algorithm. Hysteroscopic adhesiolysis was performed on participants using intrauterine adhesions, and Foley catheters with or without freeze-dried amnion grafts were placed on the participants after surgery. Patient follow up was done at 3 months, 6 months, and 1 year after surgery. Endometrial thickness was assessed by ultrasound examination while pregnancy status was recorded at each follow-up visit. During follow-up, hysteroscopy was performed to assess the American Fertility Society (AFS) again at 3 months postoperatively to observe their endometrial recovery. The median follow-up time was 7.5 months. Uterine exudates were collected at 3 h, 1 d, 2 d, 3 d, 4 d, 5 d, 6 d and 7 d after surgery. Then, the enzyme-linked immunosorbent assay kit was used to determine the levels of IL1B [interleukin (IL)-1β], tumor necrosis factor (TNF)-α, and vascular endothelial growth factor (VEGF) cytokines in the exudate. Furthermore, postoperative cytokine concentrations and patterns in the two groups of patients were compared using hierarchical cluster analysis to determine the effects of cytokines on endometrial receptivity recovery. Furthermore, we used the GEO database to establish the effects of cytokines on endometrial receptivity, as well as the biological mechanisms involved (Figure 1).

Figure 1 Flow diagram of the study design.

Study participants

Thirty patients with severe IUA who had been admitted to the Beijing Obstetrics and Gynecology Hospital affiliated to Capital Medical University between February 2017 and December 2018 were recruited in this study. Using a computer algorithm, patients were randomly assigned to the amnion group and the control group with 15 cases each. Ethical approval for this study was obtained from the Research Ethics Committee of the Beijing Obstetrics and Gynecology Hospital. Experiments were performed (under protocol number 2017-KY-082-02) according to the Helsinki Declaration of 1975 (revised in 2013). Patients eligible for surgery were required to sign an informed consent the night before surgery. The AFS scoring system was used to evaluate intrauterine adhesions. The inclusion criteria were: (I) clinically diagnosed intrauterine adhesions; (II) adhesion score ≥9 points; (III) normal ovarian function tests; (IV) aged between 18–40 years; and (V) normal results from Thinprep cytologic test. Exclusion criteria were: (I) patients with adenomyosis complications; (II) presence of uterine fibroids; (III) patients with developmental abnormalities of the uterus; (IV) those with other diseases that cause infertility or hypomenorrhea; (V) those who had been treated with hormones within 3 months before surgery; (VI) those with endocrine diseases, such as hyperthyroidism and adrenal hyperfunction; and (VII) patients who were not able to undergo the operation (1). The mean ages of patients in the amnion and control groups were 30.2 and 29.7, respectively. Statistical analyses of the basic demographic properties before grouping were performed by generalized linear regression, and results were corrected for individual characteristics based on the incorporated factors (14) (Figure 2).

Figure 2 Clinical characteristics of study participants. All the clinical characteristics above were not statistically different between the two groups (P>0.05). PBAC, pictorial blood loss assessment chart; BMI, Body Mass Index; AFS, American Fertility Society.

Sterilized freeze-dried amnion grafts

Jiangxi Rui Ji Biotechnology (Jiangxi, China) provided the sterilized freeze-dried amnion grafts used in this study, and its production processes were as follows. Fresh amniotic tissues were collected and sterilized by low-temperature freeze-drying as well as cobalt-60 radiation. The above steps allow the amniotic cells to remain in a “dormant” state, thereby guaranteeing their ability to be stored and transported at room temperature in a sealed package.

Process flow

A size-20 Foley catheter was routinely used after surgery for patients in the control group. For the amnion group, the balloon portion of the Foley catheter was covered with sterilized freeze-dried amnion grafts and hydrated in sterile normal saline for 10 minutes before insertion. The size of each amnion graft was 30 mm × 20 mm. Two amnion grafts were applied to each Foley catheter with the epithelial amnion membrane surface facing outward. In contrast, for the control group, the Foley catheter was not covered with the gift. Then, under ultrasonographic guidance, the Foley catheter was inserted into the uterine cavity. After insertion, the balloon was inflated for 2–3 minutes with 8–10 mL normal saline to ensure that the amnion graft was fully adhered to the uterine cavity. After inflation, about 3–5 mL of the normal saline solution was drawn from the balloon leaving an average of 5 mL normal saline (1). The Foley catheter remained in place for a week, with the uterine exudate being collected every day. After day 7, the balloon was deflated, and the catheter removed through an outpatient surgical procedure.

Hysteroscopic adhesiolysis

Hysteroscopic adhesiolysis was performed by an experienced hysteroscopist (H Duan) in all patients under general anaesthesia. Two misoprostol tablets (200 µg each), were vaginally administered for cervical priming the night before the procedure. A bipolar resectoscope with an 8-mm sheath and a 4-mm 12° telescope (Olympus Optical Company, Tokyo, Japan) was used after cervical dilation with a Hegar size 10 cervical dilator. Ultrasonography was routinely performed during the procedures. Laparoscopy was used to inspect the pelvic pathologies, such as endometriosis, and to check tubal patency at the end of the hysteroscopic surgery. Normal saline, delivered by an automatic hysteroscopic dilatation pump at a rate of 280–300 mL/min under an intrauterine pressure of 100 mmHg, was used as the dilatation medium.

After assessing the location, extent, and severity of the IUAs, they were resected by a needle or loop diathermy, using an electrosurgical generator voltage set at 320 W for the cutting mode. Then, fluid volume was recorded by a modified automated fluid management system. The operating surgeon determined when complete adhesiolysis had been achieved for all participants, and this was verified by the normal panoramic view of the uterine cavity under direct hysteroscopic visualization. Adhesiolysis was evidenced by an adequate uterine cavity, no signs of IUA, and visible bilateral uterine horn with or without fallopian ostium.

Enzyme-linked immunosorbent assay

Concentrations of IL1B, TNF-α and VEGF in the uterine exudate collected at different time points after hysteroscopic adhesiolysis were determined using a human IL1B, TNF-α and VEGF enzyme-linked immunosorbent assay (ELISA) kit (Uscn Life Science Inc, Wuhan, China) according to the manufacturer’s instructions. Samples or standard (50 µL) were separately added to each well followed by the addition of the detection reagent (50 µL). Then, the mixture was incubated for 30 min at 37 °C. Subsequently, 50 µL of color development reagent A and 50 µL of reagent B were added and incubation was done for 15 min at 37 °C. Furthermore, 50 µL of the stop solution was added to each well, and optical density (OD) was read at 450 nm. Washing of the plate during these procedures were done according to the routine ELISA method. Linear regression equation of a standard curve was calculated using the concentration and OD value of the standard substance according to a procedure described by Yolken RH. OD values of the samples were substituted into the equation to calculate sample concentrations in ng/L. Then, the concentration was multiplied by a dilution factor to obtain the actual cytokine concentration.

Hierarchical clustering analysis

Regression analysis was used to compare the expression levels of different cytokines. Expression levels of cytokines were first normalized to balance the influence of weights on the trend. The Min-max normalization approach was performed to have the data interval between 0 and 1 for various cytokines. The specific formula used was: x=xxminxmax. Furthermore, hierarchical cluster analysis was performed on the regression coefficients (β value) of different cytokines based on the changing trend and time points. Distance between the two coefficients was calculated using the formula Dist=XiXj2. The height between two clusters was expressed as Height=Max{d(a,b),aA,bB}. Different stages of inflammation were determined through cluster analysis (11).

Source of the microarray data

In this study, mRNA microarray datasets were retrieved from the GEO database under the accession numbers GSE58144, GSE71835, GSE92324 and GSE103465 (15,16). The inclusion criteria were: (I) age ranging between 20 and 40 years; (II) history of uterine cavity procedure; (III) normal levels of serum follicle stimulating hormone (FSH), luteinizing hormone (LH), estradiol, progesterone, anti-Mullerian hormone (AMH) and prolactin. Patients with polycystic ovarian disease, endometriosis, hormonal abnormalities, autoimmune disorders were excluded from the study. Detailed information of the samples in the data sets are shown in Table 1.

Table 1
Table 1 Overview of details for original studies included in a integration analysis of GWES for endometriosis
Full table

Data processing and integration

Microarray datasets pre-processing and normalization were performed using the affy package in R software, based on the raw data of the Affymetrix platform (17). The following methods were used: robust multi-array average (RMA, for background correction) (18), quantile (for normalization) (19), pmonly method (perfect match correction) (20) and the median polish (as a summary method) (21). Normalized data for microarray datasets based on other platforms (including Illumina (2 dataset) and Agilent (1 datasets)), were downloaded and used in the subsequent analyses. Data that were not processed using the RMA method were converted to log format (base 2). Annotation files for different microarray platforms were retrieved from the NCBI GEO database (22). Surrogate variable analysis (SVA, in the R environment, version 3.6.2) (23) was used for integration analysis and correction of batch-to-batch differences, following the published recommendations for this type of study (21). Prior to SVA analysis, all data were transformed to the log 2 format. During the data integration process, the number of genes covered by GWES differed for the different batches. Principal component analysis (PCA) was used to verify the integrated data without exerting a significant impact on data analysis due to batch effect of different platforms and to ensure that data reflected the biological characteristics of endometriosis.

Enrichment analysis

Gene-set enrichment analysis (GSEA) was performed using the “ClusterProfiler” (24) package in R. The Broad Molecular Signatures Database (MSigDB v7.0) dataset in the Kyoto Encyclopedia of Genes and Genome (KEGG) (c2.cp.kegg.v7.0.symbols) was used. This database summarizes and presents specific well-defined biological states and pathway processes. The GSEA program was run with 1,000 permutations for statistical significance estimation, and correlations between IL1B and other genes was used to rank all genes.

ClueGo (based on Cytoscape, version 3.7.2) was performed for functional category enrichment analysis of differentially expressed genes (DEGs) to verify GSEA results. GOplot package in R software was used to visualize enrichment analysis results and their regulatory conditions. The formula used for calculating the Z-score was zscore=(up-down)count. The Z-score indicates whether the GO term is likely to be decreased (negative value) or increased (positive value).

Statistical analyses

The statistical test used for the comparison of IL1B levels between the normal group and the reduced endometrial receptivity group is the t-test or paired t test. Prognostic curves were generated through the Kaplan-Meier method while log-rank tests were utilized to identify significant differences in pregnancy outcomes. Fisher’s exact test was used for enrichment analysis of DEGs. Pearson’s correlation coefficient analysis was performed for the single gene GSEA of IL1B. The “Limma” package (25) in R software was used for DEGs analysis of IL1B-high and IL1B-low samples. Multiple testing adjustments (False Discovery Rate, FDR <0.05) and log2 ratio of gene expression fold change (log2 Fold Change >1) was used to determine statistical significance. Statistical analyses were performed using GraphPad Prism software (GraphPad Software, San Diego, California) or R software.


Results

Cytokine expression patterns and clinical outcomes

Regression coefficients of cytokine levels at various time points from the first day to the seventh day after hysteroscopic adhesiolysis were determined to establish the changing trends at each time point. Further, hierarchical cluster analysis was performed to group cytokines and time points (Figure 3A). Cytokine grouping showed that TNF-α and VEGF for the amnion group and the control group were classified into one cluster. These findings indicate that the expression patterns of TNF-α and VEGF cytokines in the two groups were similar. On the contrary, the distance (height) between IL1B and the other two cytokines was significantly larger in the amnion group compared to the distance in the control group (height study =1.67 and height control =1.26, respectively). Cluster analysis for time points showed that the amnion group had distinct time stages compared to the control group. Based on the 6th day after surgery (height =1.40), the amnion group was divided into two phases. Comparisons of cytokine expression levels before and after the 6-day post-operation period showed that the amnion group exhibited significantly different expression levels of IL1B when compared to the control group. In the amnion group, IL1B increased significantly between day 6 and day 7 after hysteroscopic adhesiolysis, consistent with timing of the repair process in the endometrium after hysteroscopic adhesiolysis (9). Cytokine concentrations at each time point are shown in Tables S1,S2,S3.

Figure 3 Cytokine expression patterns and clinical outcomes. (A) Hierarchical cluster analysis of cytokine expression patterns. Background colors of each panel map to normalized coefficient values, and the link between colors and values. Blue represents rapid growth, while red is slow. The upper part of the heat map represents cluster dendrograms of cytokines, while the right side is time points with red representing the 6–7th day after surgery. (B) Histograms of changes in endometrial thickness after surgery. Blue bars represent mean changes in the amnion group, while orange bars represent the control group. FU, follow-up; m, months. (C) Histograms of changes in AFS scores after surgery. Blue bars represent mean changes in the amnion group, while orange bars represent the control group. **, P<0.01. (D) Kaplan-Meier curves of postoperative pregnant status analysis for amnion and control groups. Log-rank P=0.0097 showed a significant difference between the two groups. Number in cohort table reveals the number of people at each time point who have not yet achieved the endpoint and are still in the follow-up cohort.

Follow-up results were also analyzed. Postoperatively, endometrial thickness was found to be significantly increased in both groups compared to preoperative thickness (P<0.05). Mean values of changes in endometrial thickness were higher in the amnion group than in the control group, however, there was no statistical difference (P>0.05) (Figure 3B). The decrease in postoperative AFS levels between the two groups was significant (P=0.003), implying better endometrial recovery in the amnion group, as shown in Figure 3C.

During the follow-up period, a total of seven women in the amnion group achieved pregnancy. Of these, five pregnancies occurred naturally, while two occurred after in vitro fertilization and embryonic transfer. Spontaneous abortion during the first trimester was reported in one of the seven pregnancies of the amnion group. The remaining six pregnancies were viable at the time of the last follow-up. In the control group, three pregnancies were reported, and all had occurred after in vitro fertilization and embryonic transfer. Among these pregnancies, no spontaneous abortion was reported during the first trimester, and all three pregnancies were viable at the last follow-up. Log-rank analysis revealed that there were statistical differences between the two groups (P=0.0097) (Figure 3D). In combination with hierarchical cluster analysis, we inferred that IL1B may play a role in the process of receptivity recovery and repair of the endometrium after hysteroscopic adhesiolysis.

Effect of IL1B on repair and endometrial receptivity

Further, we evaluated the effect of IL1B on receptivity recovery and repair of endometrium. GWES datasets of premenstrual endometrial tissue specimens from patients with abnormal endometrial receptivity and history of uterine cavity procedure were retrieved from the GEO database for analysis. PCA of the different datasets was performed, after which batch differences between the datasets were integrated and analyzed. The combined data showed no significant batch effects (Figure 4A). In addition, the two groups could be distinguished after dimensionality reduction by PCA (Figure S1). Further, the expression levels of IL1B between the normal group and the reduced endometrial receptivity group were compared. The expression levels of IL1B for patients in the reduced endometrial receptivity group was significantly higher compared to IL1B expression levels for patients in the normal group (P<0.05) (Figure 4B).

Figure 4 Analysis of IL1B expression levels in the integrated data set. (A) PCA plot of the data for the different datasets. Distribution of the two groups can be seen in Figure S1. (B) Violin plot of IL1B expression. *, P<0.05.

KEGG enrichment analysis of IL1B

Gene Set Enrichment Analysis (GSEA) was used to test for single gene enrichment of pathways associated with IL1B. To comprehensively elucidate the biological pathways associated with IL1B in endometrial recovery, all integrated genes were included for enrichment analysis. Pearson correlation analysis was used to rank all genes according to their association with IL1B. The probable biological pathways associated with IL1B functions were analysed based on gene ranking to identify the pathways enriched by these genes. The expression levels of IL1B and associated genes were significantly functionally enriched in lysosomal, cell cycle and calcium signalling pathways, with normalized enrichment scores of 0.62, 0.51, and 0.49, respectively (Figure 5A). The FDR scores for lysosomal, cell cycle and calcium signalling pathways were 0.006, 0.006 and 0.0006, respectively (Figure 5B). These findings indicate that the mechanisms by which IL1B promotes receptivity recovery and repair of the endometrium is associated with lysosomal, cell cycle and calcium signalling pathways.

Figure 5 KEGG enrichment analysis of IL1B. (A) Upregulated and downregulated KEGG pathways related to changes in IL1B expression levels in the rocess of receptivity recovery and repair of the endometrium. Pathways involved are shown in blue, green and red. (B) GSEA plot of lysosomal, cell cycle and calcium signalling pathways.

The correlations between genes in the gene-sets from KEGG pathway and IL1B were further studied by performing a hierarchical cluster analysis of the genes in the lysosome, cell cycle and calcium signalling pathways according to the expression levels of IL1B. The expression levels of genes in these pathways were shown to increase with an increase in IL1B levels with similar expression patterns (Figure 6). In addition, the expression levels of CTSA, cyclin-dependent kinases (CDKs) and CD38 genes in the lysosome, cell cycle and calcium signalling pathways, respectively, were highly correlated with IL1B expression levels.

Figure 6 Heatmap showing KEGG pathways related to the functions of IL1B. (A) Heatmap of calcium signalling pathway. (B) Heatmap of cell cycle pathway. (C) Heatmap of lysosomal pathway. Red color represents upregulated genes while blue color represents downregulated genes.

Biological functions associated with IL1B over-expression

To verify the results from Gene Set Enrichment Analysis and to evaluate the biological functions associated with IL1B over-expression, we grouped patients into IL1B-high (n=50) and IL1B-low (n=50) groups. Then, DEGs analysis of the two groups was performed. Selected DEGs were subjected to GO and KEGG enrichment analyses. ClueGO enrichment analysis revealed that the enrichment results were consistent with GSEA results. The gene expression fold change results revealed that lysosomal, cell cycle and calcium signaling pathways are positively enriched in samples with elevated expression levels of IL1B compared to samples with suppressed expression levels of IL1B (Figure 7A). In addition, we calculated the specific GO enrichment of DEGs. Function and location network diagram of DEGs enrichment is shown in Figure 7B. In the biological processes (BP), the mainly enriched terms were “cell division” and “cell cycle” (FDR =5.05×10−22 and 2.46×10−20, respectively). These terms are associated with the cell cycle pathway. Cellular components (CC) that were enriched were cyclin-dependent protein serine/threonine kinase regulator activity (FDR =2.32×10−14) and cation-transporting ATPase activity (FDR =4.08×10−13) terms, which are implicated in the cell cycle pathway. Molecular function (MF) terms that were enriched were the “vacuole” and “lysosome” (FDR =2.55×10−22 and 7.38×10−21, respectively), which are associated with the lysosomal pathway. The enriched genes in each GO terms are shown in Figure 7C.

Figure 7 IL1B over-expression enrichment analysis. (A) GO Circle. From outside to inside: GO ID; upregulated and downregulated genes (red color represents upregulated genes, blue color represents downregulated genes); z-score. (B) KEGG and GO enrichment network diagram. Each color represents a KEGG pathway term. (C) GO Chord. The left side is the gene (level of fold change of the gene is color-coded). The right side represents the different GO terms. Connected bands indicate that a gene is highly correlated to its corresponding GO terms.

Discussion

Hysteroscopic lysis of adhesions is an effective surgical treatment approach for uterine scars. However, there are no effective therapeutic approaches that can prevent recurrence (26). Hysteroscopic surgery is the gold standard for the management of severe IUAs. This technique is limited by the application of energy devices, such as electrodes, which produce electrocaloric effects on normal endometrial and myometrium tissues while separating and removing scar tissues in the uterine cavity. These effects result to a high re-adhesion rate (30–66%) of the uterine cavity and a low pregnancy rate (40%) after surgery (3). Therefore, avoidance of postoperative adhesion reformation and restoration of fertility are of utmost importance after hysteroscopic adhesiolysis.

In our previous study, we reported a significant improvement in endometrium repair and prevention of adhesion reformation using freeze-dried amnion graft (1). In addition, Amer et al. (27) reported that amnion grafts effectively improve endometrial receptivity thereby promoting pregnancy, consistent with the pregnancy outcome of this study. The amnion graft regulates tissue repair by regulating the expression levels of cytokines (28,29). Immune cells, especially macrophages, play a crucial role in the repair process after hysteroscopic adhesiolysis. Macrophage-related cytokines include IL1B, TNF-α, and VEGF. The expression levels of these cytokines change to reflect the corresponding immune regulation process (7). However, a limited number of studies have evaluated the expression patterns of cytokines at different time points after hysteroscopic adhesiolysis. Therefore, we performed a randomized controlled trial on patients and measured cytokine concentrations in uterine exudates at different time points after hysteroscopic adhesiolysis. Cytokine expression patterns in the amnion group were found to be significantly different from those of the control group. In a previous study, Orhue et al. found that the repair phase of inflammatory responses occur in approximately seven days after hysteroscopic adhesiolysis (9). In our study, changing patterns in cytokine expression levels in the amnion group showed clear stratifications when compared to the control group. The 6th day after surgery in the amnion group divided the inflammatory reaction stages of the endometrium into two phases. This stratification pattern was consistent to the findings reported by Orhue et al. (9). Immune pattern stratification may be dominated by macrophage changes. Xin et al. documented that immune regulation of macrophages promotes endometrial regeneration and fertility restoration. Immune responses after tissue trauma lasts for approximately 1–2 weeks. Immune response durations can significantly impact on the healing process. The first stage of immune response is dominated by M1 macrophages, which play a vital role in removing tissues, residual fibers, and tissue debris, as well as synthesizing pro-inflammatory cytokines and growth factors. In the late stage of inflammation, M2 macrophages and T-regs jointly promote repair of the endometrial tissues (7). Elevated expression levels of cytokines such as TNF-α in the early stages promote polarization of M1 macrophages to M2 macrophages, as well as the synthesis and secretion of IL1B by macrophages. In addition, IL1B in the early stages can act on IL-1RA to promote its synthesis and secretion. In this study, the peak of IL1B secretion was delayed in the amnion group. This finding implies that the amnion graft prolongs the effect of repair phase by regulating cytokines. Furthermore, it suppresses the secretion of adhesion promoting factors during the repair period, which promotes endometrial tissue repair, reduces scar formation, and promotes endometrial receptivity recovery. Cluster analysis showed that the secretion patterns of IL1B were not consistent with the levels of TNF-α and VEGF. From day 6 to day 7 after surgery, IL1B secretion patterns in the amnion group were found to be altered. Besides, the aforementioned changes were accompanied by improved pregnancy outcomes. This observation implies that the repair phase of endometrial tissues is affected by amnion gifts, and it begins from the sixth to seventh day after hysteroscopic adhesiolysis. Changes in expression levels of IL1B may play an important role in endometrial repair and receptivity.

IL-1 was first reported by Gray et al. in 1972 when culturing monocytes. The IL-1 family includes IL-1α, IL1B, IL-33, and the IL-1 receptor antagonist (IL-1RA) (30). Recently, the role of IL1B in reproductive activities has been elucidated and is reported to play a key role in endometrial receptivity. Rossi et al. reported that IL1B promotes endometrium proliferation and repair pathways before menstruation. In addition, IL1B activates endometrial basal cells, thereby maintaining a healthy endometrial receptivity for women (6). In this study, microarray datasets of reduced endometrial receptivity and normal premenstrual endometrial tissues were retrieved from the GEO database for analysis. A history of uterine cavity procedures was used as the inclusion criteria to explore the effects and mechanisms of action of IL1B on the endometrial repair process and recovery of endometrial receptivity.

In this clinical trial, we found that the expression levels of IL1B mRNA in the normal group were significantly higher than for patients in the endometrial receptivity reduced group. This finding is consistent with those reported by Rossi et al. Enrichment analysis on IL1B -related genes was performed to evaluate the role of IL1B in endometrial repair and receptivity. Enrichment analysis showed that genes that were positively correlated with IL1B are mainly enriched in calcium signaling, cell cycle, and lysosome pathways. The specific mechanism is shown in Figure 8.

Figure 8 Different steps of interleukin (IL)-1β production pathway and signal transmission. (A) Priming, secretion and promotion of phagocytic functions of macrophages. IL-1β/IL-1R activates IRAK1/4 and TRAF6 promotes its production. Secretion of IL-1β is regulated by a secretory lysosome, and IL-1β further upregulates the lysosomal pathway. (B) IL-1β promotes endometrial cell proliferation and activates CDKs through the NF-κB pathway to promote transformation of cells from G1 to S phase. (C) IL-1β promotes CD38 and its downstream pathways {cADPR, NAADP and PI [3,5] P2} by binding IL-1R. NAADP activates a distinct Ca2+ release mechanism on separate acidic Ca2+ stores. Ca2+ release through the NAADP-sensitive mechanism may also have a feedback mechanism onto RYRs or IP3Rs. This pathway may be activated in the uterus junction zone (JZ) and preserve its regular contraction waves.

IL1B is a potent pro-inflammatory cytokine that initiates and amplifies the effects associated with tissue damage responses. The production and release of IL1B is a multistep process and is stimulated by damaged-associated molecular pattern molecules (DAMPs). IL1B is first synthesized into biologically inactive proIL1B, which is processed by caspase-1 into mature, biologically active IL1B, and then released into the extracellular environment (31). Women with elevated endometrial receptivity have up-regulated IL1B expression levels in the endometrium (32). Besides, previous studies on endometriosis revealed that the expression levels of IL1B in the abdominal cavity is high, implying that IL1B is involved in the proliferation of endometrial cells (6). After culturing of human menstrual blood-derived stromal cells, Zhang et al. reported that cytokines such as IL1B can stimulate cells to transform from the G1 phase to the S phase (33). In this study, IL1B up-regulated CDKs protein through the NF-κB pathway, which positively regulates the cell cycle pathway and promotes endometrial basal cell transition from G1 phase to S phase. These activities further enhance the proliferation and crawling of endometrial cells covering the wound surface.

IL1B plays a role in moderation of immune activation and positively regulates the lysosomal pathway through proinflammatory actions to promote phagocytosis. This activity destroys and ablates fibrin around the wound, prevents the fibrotic healing process of the endometrium, and inhibits adhesion formation after surgery. Moreover, IL1B secretion depends on the exocytosis of secretory lysosomes (30). Findings from this study imply that IL1B is involved in the lysosomal pathway, thereby affecting endometrial repair.

Notably, IL1B is involved in the calcium signaling pathway, where it regulates endometrial receptivity. In our previous study, we explored changes in calcium ion signaling pathway in the endometrium and junction zone (JZ). Abnormalities in this pathway can cause irregular contraction waves in the JZ of the uterus and inhibit endometrial receptivity (34). Besides, rhythmic contraction helps prevent the formation of fiber adhesions during the repair process. Tribe et al. (35) reported that IL1B can cause changes in key calcium homeostasis mechanisms, thereby promoting the contraction of the myometrium. In addition, IL1B enhances the expression of sarcoplasmic reticulum calcium ATPase (SERCA 2b) in human myometrial smooth muscle (HMSM) cells. Further, it promotes cyclopiazonic acid-induced calcium transients by activation of lanthanum-sensitive, store-operated calcium entry.

Through randomized controlled designs, monitoring of cytokine expression levels and hierarchical clustering model analyses, combined with microarray analysis, this study explored the effects of changes in expression patterns of cytokines caused by freeze-dried amnion grafts in endometrial receptivity after hysteroscopic adhesiolysis. However, this study had some limitations. Patients involved in this study showed moderate to severe IUA, therefore, for ethical reasons we could not collect the endometrium of patients after hysteroscopic adhesiolysis for further analysis. Therefore, we retrieved endometrium microarrays from the GEO database for analysis. We used the history of uterine cavity procedure as the inclusion criteria to evaluate the effect of IL1B on the recovery of endometrial receptivity during endometrial repair. Secondly, we did not verify the changes in cytokine expression levels observed in patients after hysteroscopic adhesiolysis. To ensure accuracy of the results, we performed DEGs analysis and the results were consistent with those of GSEA. In addition, the findings of this study are consistent with findings from previous studies. Therefore, we conclude that IL1B is a “sign” of the recovery of endometrial receptivity after hysteroscopic adhesiolysis. However, further studies using in vitro cell cultures and animal models should be performed to explore the effects of IL1B and its related pathways on the recovery of endometrial receptivity. Thus, it cannot be concluded that IL1B is the deciding parameter. Finally, all data in this study were normalized and data deviations generated by different batches and different machines were corrected through the Combat calculation method, which directly removes known batch effects through the SVA package. To prevent the bias generated by different platforms, we used a method by Leek et al. (36) and performed prior distribution assumptions and PCA. The results were consistent with those from the previous study, and no significant batch effects were found. However, details of the original data, including race, processing method, and different batches may produce inevitable effects, therefore, the results should be verified further through experiments.


Conclusions

In summary, this study established a postoperative cytokine change model and used the GEO database to evaluate cytokine expression patterns in patients who had undergone hysteroscopic adhesiolysis. The findings showed that freeze-dried amnion graft promotes endometrial repair and receptivity recovery by changing the expression patterns of cytokines. Therefore, we concluded that changes in expression patterns of cytokines after surgery promote endometrial repair and prevent re-adhesion of the uterine cavity. Furthermore, changes in cytokine expression patterns in the uterine exudate can be used as an indicator for postoperative evaluation and outcome prediction.


Acknowledgments

The paper is edited by Home for researchers’ editorial team.

Funding: This study was financially supported by the National Key Research and Development Program of China (2018YFC1004803).


Footnote

Reporting Checklist: The authors have completed the MDAR reporting checklist (available at http://dx.doi.org/10.21037/atm-21-195).

Data Sharing Statement: Available at http://dx.doi.org/10.21037/atm-21-195

Peer Review File: Available at http://dx.doi.org/10.21037/atm-21-195

Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/atm-21-195). The authors have no conflicts of interest to declare.

Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. Ethical approval for this study was obtained from the Research Ethics Committee of the Beijing Obstetrics and Gynecology Hospital. Experiments were performed (under protocol number 2017-KY-082-02) according to the Helsinki Declaration of 1975 (revised in 2013). Patients eligible for surgery were required to sign an informed consent the night before surgery.

Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.


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Cite this article as: Li B, Duan H, Wang S, Wang Y, Chang Y, Guo Z, Li Y. Hierarchical cluster analysis in the study of the effect of cytokine expression patterns on endometrial repair and receptivity after hysteroscopic adhesiolysis. Ann Transl Med 2021;9(9):746. doi: 10.21037/atm-21-195

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