Earlier diagnosis improves COVID-19 prognosis: a nationwide retrospective cohort analysis
Introduction
COVID-19 has been spreading in many countries, and the World Health Organization announced that this disease will persist for a long time (1). Recent studies have indicated that procrastination before receiving a COVID-19 diagnosis may cause delayed admission and treatment, leading to higher mortality. Several studies have documented that from the perspective of the imaging examination, late-phase patients (imaged 6–14 days after symptom onset) are more likely to have aggravated abnormal lung CT findings and lesions (2,3). Whether earlier diagnosis can improve COVID-19 prognosis is a critical issue to be addressed. To date, the association between COVID-19 prognosis and time from symptom onset to confirmed diagnosis has received scant in-depth analysis and is still ambiguous.
Shortening the time from symptom onset to confirmed diagnosis includes two aspects: the duration from symptom onset to initial medical contact and the duration from initial visit to a confirmed diagnosis. First, we need patients to identify the earliest symptoms and visit the clinic as promptly as possible (4), but this time interval varies in persons at present (5,6). In addition, hospitals must improve diagnostic efficiency, that is, the time to confirm a COVID-19 diagnosis. Notably, the number of reverse-transcription polymerase chain reaction (RT-PCR) tests among patients can be different; for instance, some patients must undergo ≥2 tests to confirm a diagnosis, and although most are diagnosed in 2 days, up to 7 days may elapse before a confirmed diagnosis (7).
There is no clear consensus among nations on attention to early diagnosis and treatment. The urgency level of shortening the time from symptom onset to confirmed diagnosis varies in countries; that is, some countries may greatly value improving the efficiency of diagnosis, while others may not, and some may change their guidelines and attach importance to it though underrating it at first. Japan, Thailand, Italy, England, Russia, New Zealand, etc., have been gradually liberalizing the conditions for applying PCR tests, such as lessening the symptom requirements for testing or offering free testing (8-13). For instance, given Japan's previous high threshold for COVID-19 testing and some patients' delayed conditions, on 6 May 2020, Japan's Ministry of Health, Labour, and Welfare lowered the threshold for testing, and the new standard did not mention specific fever degrees. However, some countries hold a different opinion; for example, Sweden introduced a new strategy in May 2020 to stop counting confirmed cases and to stop testing people not in hospitals or those not representing high-prevalence populations (14).
We hypothesized that earlier diagnosis might produce better prognosis and that a delayed diagnosis would be associated with poor prognosis as an independent factor. To test this hypothesis, we collected data for COVID-19 patients in China nationwide and analyzed the distribution and cutoffs of time from symptom onset to confirmed diagnosis, including from symptom onset to first medical visit and from first medical visit to confirmed diagnosis. Survival analysis and evaluation models as well as comparisons between different diagnosis efficiency groups were conducted to remedy the neglected aspects of other studies, better notarize the role of time from symptom onset to confirmed diagnosis confirmed and determine who is truly in need of earlier consultation and diagnosis to avoid overwhelming the health services system.
We present the following article in accordance with the Materials Design Analysis Reporting (MDAR) checklist and the STROBE reporting checklist (available at http://dx.doi.org/10.21037/atm-20-7210).
Methods
Design, data sources, and data extraction
This was a multicenter retrospective observational cohort study. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). This study was approved by the ethics committee of the First Affiliated Hospital of Guangzhou Medical University (No.: 2020-92). As this is a retrospective observational study, informed consent was waived. Ratified by the National Health Commission of the People’s Republic of China, a national cohort of COVID-19 patients at 575 hospitals across 31 provinces/autonomous regions/provincial municipalities in mainland China was retrospectively established, covering 31.7% of accredited hospitals admitting COVID-19 patients (15,16). According to the WHO interim guidance, cases were confirmed by real-time RT-PCR assay or high-throughput sequencing of pharyngeal and nasal swab specimens. The cohort comprised 1,590 patients hospitalized with COVID-19 from December 11th to Jan 31st and accounted for 13.5% of the total cases at that time. The clinical data, examined and extracted as a computerized database by experienced respiratory clinicians, were verified by double entry prior to analysis.
Data collection
Demographic, clinical, and prognostic characteristics (i.e., sex, age, smoking status, primary preexisting chronic diseases, symptoms) and the first inspection and thoracic image results on admission were all collected. For chronic comorbidities, we recorded chronic obstructive pulmonary disease (COPD), diabetes, hypertension, coronary heart disease, cerebrovascular disease, hepatitis B infection, malignancy, chronic renal diseases, and immunodeficiency.
The dates of symptom onset, first medical visit, and confirmed diagnosis were also recorded. We calculated the time from symptom onset to confirmed diagnosis, time from symptom onset to first medical visit, and time from first medical visit to confirmed diagnosis; any values less than 1.0 day were deleted from our analysis. A longer time from symptom onset to confirmed diagnosis was deemed exposure in the cohort.
The prognosis outcome was reaching severe disease level, consisting of patients assessed as having severe pneumonia according to the Chinese Expert Consensus on Clinical Practice for Emergency Severe Pneumonia (see Online Supplement for details), those admitted to an intensive care unit (ICU), those who received invasive ventilation, and those who died; the first date of reaching one of these occurrences was used to determine the duration between admission and reaching a severe disease level.
The prognosis outcome and duration between admission and reaching a severe disease level were recorded. Patients with durations between admission and reaching a severe disease level of more than 31 days (more than 95% of patients with a complete end point had a duration of less than 31 days) were treated as right-censored data in prognosis analysis.
Statistical analysis
We conducted a summary of demographic information on the total sample, and the data were compared between severe and nonsevere cases. Descriptive analysis for the time from symptom onset to confirmed diagnosis (including from symptom onset to first medical visit and from first medical visit to confirmed diagnosis) and survival time (duration between admission and reaching a severe disease level) was performed, and a frequency density map was drawn. A demographic and clinical data comparison between the high and low diagnosis efficiency groups, depending on the cutoff value of the time from symptom onset to confirmed diagnosis, was also processed. Continuous data are presented as the means and ranges. The Wilcoxon rank-sum test was used to compare nonparametric values. Categorical data are presented as counts and percentages and were compared using chi-square and Fisher’s exact tests. In the case of missing values (considered missing completely at random (MCAR)), no method of replacement was used. A complete case analysis was performed (listwise deletion) (17).
To turn the continuous variables into categorical ones, reducing disproportionate impact from extreme values to stabilize the calculated model (“Days”, as a unit of measurement, is too precise for evaluating prognosis results), maximally selected rank statistics (Maxstat) analysis (18) was performed to determine the appropriate cutoff time from symptom onset to confirmed diagnosis. Survival curves from different diagnosis efficiency groups were prepared by using the Kaplan-Meier (KM) method.
Total survival curves of severe-level patients were drawn. The prognostic significance of the prehospitalization factors (time from symptom onset to confirmed diagnosis, sex, age, smoking status, and presence of preexisting chronic diseases) was analyzed via a log-rank test and multivariate Cox proportional hazard regression when the proportional hazard assumption was not violated. The hazard ratio (HR), along with the 95% confidence interval (95% CI), were described.
Conditional inference tree (CTREE) analysis, a machine learning method, was performed as a complementary analysis with significant factors (probability values < 0.1 in the multivariate Cox proportional hazard regression), which often utilizes multiple significance tests on the permutations of the features on the tree nodes and information measures such as the Gini coefficient to partition the predictors most associated with the outcome and split the tree recursively, dividing the patients into subsamples with different severe disease level risks (19).
Additionally, we compared the prognostic characteristics and first inspection results on admission between patients visiting clinics 4 days after symptom onset and the others. We also analyzed how diagnostic efficiency improved with time in China (see Online Supplement for details). Probability values <0.05 were considered statistically significant, and statistical analyses were performed using R software (R version 4.0.0 https://www.r-project.org/).
Results
Demographic and clinical characteristics
By 31 January 2020, we had included 1,590 patients; 237 of these patients reached a severe disease level, accounting for 14.9%, of which 50 (3.1% of the total patients, 21.0% of the severe disease-level patients) died, 102 (6.4%, 43.0%) were admitted to an ICU, 51 (3.2%, 21.5%) received invasive ventilation, and 185 (11.64%, 78.1%) were evaluated as having severe disease by the Chinese Expert Consensus on Clinical Practice for Emergency Severe Pneumonia (20). A summary of the demographic information for the total cohort is shown in Table S1, and the data were compared between severe and nonsevere levels.
Of these 1,590 patients, the median age was 48.0 years old, and only 647 patients (40.6%) were females. Except for fever on or after hospitalization (88.0%), the most common symptom was dry cough (70.2%). We identified 399 (25.1%) patients with at least one chronic preexisting disease. More than 85% of the patients had at least one abnormal chest CT or X-ray manifestation. Significantly considerable differences in diagnosis efficiency and outcome-related durations were also observed.
Diagnosis time-efficiency or outcome-related duration characteristics and cut points
We further analyzed and described the durations of diagnosis-related time efficiency and outcome (Table 1), and a frequency density figure was drawn (Figure S1). For these 1,590 patients, the medians of duration between symptom onset and confirmed diagnosis, between symptom onset and first medical visit, between first medical visit and confirmed diagnosis, and between admission and reaching a severe disease level were 6, 3, 2, and 8 days, respectively.
Full table
To determine the duration cutoffs, 350 observations were deleted due to missing outcome durations (lack of either admission date or the date when the condition turned to a severe disease level or calculated as negative numbers). In addition, 11 patients’ (5%, 11/237) numbers of days between admission and reaching a severe disease level were significant outliers (far more than the third quartile plus 1.5 times of differentials between the first and third quartile, and the authenticity failed to be traced back) and were excluded. Hence, 1229 patients remained for Maxstat analysis to determine the optimal thresholds.
The cutoffs of durations between symptom onset and confirmed diagnosis, between symptom onset and first medical visit, and between first medical visit and confirmed diagnosis were 5, 4, and 3 days, respectively (Table 2), according to the optimal log-rank test P value (Figures 1,2).
Full table
Prognostic analysis
We conducted further prognostic analysis on the 1,229 patients with complete prognosis result indexes (admission date, endpoint date, endpoint result). An overall survival curve was drawn (Figure S2). Univariate log-rank analysis showed that age, sex, comorbidities, and time from symptom onset to confirmed diagnosis were doubtful influencing factors on COVID-19 prognosis (P<0.05, Table 3). After adjusting for age, sex, smoking status, and comorbidity status, multivariate Cox proportional hazard regression analysis showed that age [hazard ratio (HR): 1.03; 95% CI: 1.01–1.04], comorbidity status (HR: 1.84; 95% CI: 1.23–2.73), and duration from symptom onset to confirmed diagnosis (HR: 1.69; 95% CI: 1.10–2.60) were strong independent predictors of COVID-19 severity. When considering the duration from symptom onset to the first medical visit and from the first medical visit to confirmed diagnosis, age (HR: 1.03; 95% CI: 1.01–1.04), comorbidity status (HR: 1.77; 95% CI: 1.18–2.68), and duration from symptom onset to the first medical visit (HR: 1.56; 95% CI: 1.07–2.26) were significantly associated with COVID-19 severity (Table 3).
Full table
CTREE was used to further analyze the association between prognostic outcome and significant factors in the multivariate Cox regression (P<0.1), determining risk thresholds and relations in differentiating overall survival. The CTREE model with age, chronic comorbidity status, and duration from symptom onset to diagnosis demonstrated that patients with preexisting chronic diseases and aged over 61 years were more likely to reach a severe disease level. Patients without chronic comorbidities could also have a similar risk of reaching severity when diagnosed >5 days after symptom onset and aged over 51 years (Figure 3A).
Another CTREE model with age, chronic comorbidity status, duration from symptom onset to a first medical visit, and duration from first medical visit to confirmed diagnosis revealed that patients without chronic comorbidities who received a diagnosis >3 days after the first medical consultation and aged over 55 years had the worst prognosis. Patients with chronic comorbidities visiting the clinic >4 days after symptom onset took second place (Figure 3B). Both CTREE prognosis models showed that diagnosis-related time-efficiency durations play an important role in disease progression and that individuals with older age and more comorbidities are more likely to be at risk.
Furthermore, by comparing the prognostic characteristics and first inspection results on admission between patients visiting the clinic 4 days after symptom onset and others, we found that the incidence of acute respiratory distress syndrome (ARDS) was higher in patients visiting clinics more than 4 days after symptom onset. Male sex, older age, dry cough, productive cough, shortness of breath, and COPD were more common in the same group. Lower oxygen saturation and albumin levels as well as higher WBC counts, C-reactive protein levels, glutamic oxaloacetic transaminase levels, lactate dehydrogenase levels, direct bilirubin levels, and D-dimer levels for the first admission test were found in the procrastination group (P<0.05) (Table 4).
Full table
Additionally, the overall diagnosis efficiency increased over time in China, especially the duration from a first medical visit to confirmed diagnosis, which improved from 16 to 23 January. The duration from symptom onset to the first medical visit was noticeably shortened and became more consistent from 5 to 20 January (Figure S3).
Discussion
Our research is the first study to thoroughly investigate the impact of time from symptom onset to confirmed diagnosis on prognosis and clinical characteristics in COVID-19 patients in China nationwide. Together with the time from symptom onset to confirmed diagnosis, prehospital factors among patients with COVID-19, such as comorbidities, age, sex, and smoking status, were also considered in the comprehensive risk assessment and survival models of prognosis. Our findings suggested that the time from symptom onset to confirmed diagnosis could play a crucial role in COVID-19 prognosis with emphasis on older patients and those with chronic comorbidities; these findings are notable and should receive attention from both hospitals and especially patients. COPD patients are more likely to procrastinate before initiating the first medical consultation.
The commonality with other studies
According to our results, there are advantages to decreasing the total time between symptom onset and confirmed diagnosis to less than 5 days. Patients with chronic comorbidities are recommended to visit the clinic no more than 4 days after symptom onset. Patients over 55 years old should be diagnosed 3 days after medical consultation. Therefore, patients with older age and chronic comorbidities are more sensitive to diagnostic efficiency (21,22).
Our research is consistent with the latest references in the field of COVID-19 progression. Notwithstanding the variations in different studies owing to the sample size and where the patients were treated, it has been reported that COVID-19 symptom aggravation could occur 1–20 days, mainly 7–14 days, after symptom onset (21,23,24). The viral loads in sputum samples and throat swabs peak at approximately 5–10 days after symptom onset, especially 5–7 days (25-27). A high viral load and subsequent viremia may increase the severity of illness (28). Older patients usually have a shorter period from symptom onset to adverse outcomes, ranging from 6 to 41 days and have a higher risk of symptomatic infection (22,29,30).
Characteristics of patients procrastinating before first medical consultation
Notably, there were significantly more COPD patients in the group with a longer duration from symptom onset to a first medical visit as well as patients with symptoms such as dry cough, productive cough, and shortness of breath, which are often seen in COPD patients. Common symptoms of COVID-19 include fever, dry cough, fatigue, productive cough, and shortness of breath, which are similar to the symptoms of COPD. Consequently, we can infer that COPD patients may have difficulties identifying COVID-19 symptoms, and guidance for them should be made. In addition, several researchers have demonstrated that COPD could be a risk factor for worse prognosis in COVID-19 patients (31,32).
We also found more severe disease, worse prognosis, or ARDS cases in the procrastination group, which echoes many other types of research. Severe patients always suffer from dyspnea and/or hypoxemia 7 days after symptom onset and then quickly progress to coagulopathy, septic shock, ARDS, irreformable metabolic acidosis and multiple organ failure, especially in older patients (22,29,30).
The procrastination group had a higher incidence of total abnormalities, ground-glass opacities, and pulmonary infiltrates. Many studies on the time course of lung aggregation on chest images echo our results, revealing that abnormalities reach the greatest severity approximately 6–14 days after initial symptom onset (33-37). Patients scanned within 2–4 days after symptom onset show no or fewer abnormalities. Our study also verifies that visiting the clinic later may be associated with worse lung images both on radiographs and computed tomography.
In the first admission test, oxygen saturation and albumin levels were found to be lower in patients who procrastinated before receiving a medical consultation, indicating their worse status. The higher glutamic oxaloacetic transaminase, lactate dehydrogenase, and direct bilirubin levels observed in these patients may be related to the expression patterns of angiotensin-converting enzyme 2 (ACE2). Some studies have revealed that 2019 novel coronavirus (SARS-CoV-2) may directly infect and impair bile duct cells and cause bile duct dysfunction by using ACE2. In contrast, bile duct epithelial cells play a key role in liver regeneration and the immune response (38). Higher D-dimer levels in the procrastination group could also worsen their prognosis, as a novel study confirmed an independent association between thrombosis (D-dimer) and mortality (4). Higher white blood cell (WBC) counts and C-reactive protein (CRP) levels were also discovered, and higher CRP concentrations were associated with COVID-19 severity (39,40). Delayed initiation of supportive care for COVID-19 patients might prolong the illness duration, affecting host immune-inflammatory and thrombotic responses and even clinical outcomes (4).
Limitations
First, recall bias could be a limitation. The date of symptom onset may not be precise, depending on patients’ recall after admission for COVID-19. Second, not all patients were followed entirely to the outcome, truncating the correlation with disease course for some patients to some degree. Third, some patients were excluded from the analysis because of incomplete clinical histories or characteristics. Fourth, our cohort was formed in the very early outbreak phase of the epidemic, and the treatment factors and patient admission diagnosis were not completely collected in their totality. We only took prehospital factors, which are more related to clinical triage, into consideration in our survival analysis, although treatment strategy factors could be crucial for prognosis. In addition, only the presence or absence of chronic comorbidities described above was recorded. Fifth, there are reports of asymptomatic COVID-19 among patients with COVID-19 infection, especially younger patients (41). They may have negative results in the PCR test, chest radiographs, or CT scans. This subset of patients does not fit the models we produced in this research.
Conclusions
Among laboratory-confirmed cases of COVID-19 nationwide, patients with a longer duration from symptom onset to confirmed diagnosis yielded worse prognosis, especially those who procrastinated before receiving a medical consultation. Time from symptom onset to confirmed diagnosis shows more sensitivity in older patients, and a delayed diagnosis confirmation (of more than 5 days after symptom onset) could worsen their prognosis. Moreover, a diagnosis within 3 days should be made for older patients over 55 years. Patients with chronic comorbidities should consult doctors 4 days after symptom onset.
Proper triage should be applied by more carefully inquiring about the illness history to identify patients’ risk stratification, recognizing patients with a delayed condition who would be more likely to develop an adverse prognosis, namely, older patients with comorbidities. Patients with COPD or any other respiratory disease should be more aware of changes in their symptoms, seek prompt medical attention, and be better guided.
Acknowledgments
We thank the support from National Health Commission, Department of Science and Technology of Guangdong Province, and the hospital staff for their efforts in collecting the information. We are indebted to the coordination of Drs. Zong-Jiu Zhang, Ya-Hui Jiao, Bin Du, Xin-Qiang Gao and Tao Wei (National Health Commission), Yu-Fei Duan and Zhi-Ling Zhao (Health Commission of Guangdong Province), and Yi-Min Li, Zi-Jing Liang, Nuo-Fu Zhang, Shi-Yue Li, Qing-Hui Huang, Wen-Xi Huang and Ming Li (Guangzhou Institute of Respiratory Health) who greatly facilitated the collection of patient data. We also thank Li-Qiang Wang, Wei-Peng Cai, and Zi-Sheng Chen (the sixth affiliated hospital of Guangzhou medical university) and Chang-xing Ou, Xiao-Min Peng, Si-Ni Cui, Yuan Wang, Mou Zeng, Xin Hao, Qi-Hua He, Jing-Pei Li, Xu-Kai Li, Wei Wang, Li-Min Ou, Ya-Lei Zhang, Jing-Wei Liu, Xin-Guo Xiong, Wei-Juna Shi, San-Mei Yu, Run-Dong Qin, Si-Yang Yao, Bo-Meng Zhang, Xiao-Hong Xie, Zhan-Hong Xie, Wan-Di Wang, Xiao-Xian Zhang, Hui-Yin Xu, Zi-Qing Zhou, Ying Jiang, Ni Liu, Jing-Jing Yuan, Zheng Zhu, Jie-Xia Zhang, Hong-Hao Li, Wei-Hua Huang, Lu-Lin Wang, Jie-Ying Li, Li-Fen Gao, Jia-Bo Gao, Cai-Chen Li, Xue-Wei Chen, Jia-Bo Gao, Ming-Shan Xue, Shou-Xie Huang, Jia-Man Tang, Wei-Li Gu, And Jin-Lin Wang (Guangzhou Institute of Respiratory Health) for their dedication to data entry and verification. Special thanks are given to Jie-Yi Zhao, Jun-Yong Ou, Liu-Yang Yuan, Ye-Qi Gu, Wen-Hui Guan and Yi-Qiu Xiao (Guangzhou Medical University) and Jun-Yao Tang and Zi-Qi Lin for information collection and figure optimization. We are grateful to Tecent Co. Ltd. for their provision of the number of certified hospitals for admission of patients with COVID-19 throughout China, and to Tian-Peng Co. Ltd. for their technical support. Finally, we thank all the patients who consented to donate their data for analysis and the medical staff working on the front line.
Funding: The study was supported by National Key Technology R&D program (2018YFC1311900).
Footnote
Reporting Checklist: The authors have completed the MDAR reporting checklist and the STROBE reporting checklist. Available at http://dx.doi.org/10.21037/atm-20-7210
Data Sharing Statement: Available at http://dx.doi.org/10.21037/atm-20-7210
Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/atm-20-7210). Dr. JH serves as an Editors-in-Chief of Annals of Translational Medicine. The other authors have no conflicts of interest to declare.
Ethical Statement: The authors are accountable for all aspects of the work and ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). This study was approved by the ethics committee of the First Affiliated Hospital of Guangzhou Medical University (No.: 2020-92). As this is a retrospective observational study, informed consent was waived.
Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
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